PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.282100.1
Common NameCsa_1G425940, LOC101203659
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 242aa    MW: 27336.1 Da    PI: 4.7769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.282100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-134992654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     + Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A++YI++L
  Cucsa.282100.1 49 VASERNRRRKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIHDL 92
                    578*********************66......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1841107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.8314392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-134697No hitNo description
PfamPF000102.2E-114892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-164998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1649107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDIIGDDYLN PFGNEIFIGE ELDSWGLEEP FSGDYDSSSP DGSAASKNVA SERNRRRKLN  60
ERLFALRSVV PNISKMDKAS IIKDAIDYIH DLHDQERRIQ AEIYELESGK LKKITGYEFD  120
QDQLPLLLRS KRKKTEQYFS YDSPVSRISP IEVLDLSVTY MGDRTIVVSM TCCKRADSMV  180
KLCEVFESLN LKIITANITA VSGRLLKTVF IEAEQEERDC LKIKIETAIA GLNDPHSPMS  240
I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-103LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-103LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146337.11e-178PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV99e-82BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0A0LU951e-178A0A0A0LU95_CUCSA; Uncharacterized protein
STRINGVIT_11s0052g00100.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-61bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]